pypfilt
0.7.2
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
_
__init__() (pypfilt.time.Datetime method)
(pypfilt.time.Scalar method)
A
active_particles() (pypfilt.examples.sir.SirCtmc method)
add_rows() (pypfilt.summary.BackcastPredictiveCIs method)
(pypfilt.Table method)
(pypfilt.summary.EnsembleSnapshot method)
(pypfilt.summary.ForecastSnapshot method)
(pypfilt.summary.ModelCIs method)
(pypfilt.summary.ParamCovar method)
(pypfilt.summary.PredictiveCIs method)
(pypfilt.summary.SimulatedObs method)
add_scalar() (pypfilt.time.Time method)
add_to_legend() (pypfilt.plot.Plot method)
all_observations (pypfilt.build.Context attribute)
apply_ground_truth_prior() (in module pypfilt.examples.predation)
apply_style() (in module pypfilt.plot)
as_list() (in module pypfilt.scenario)
avg_var_wt() (in module pypfilt.stats)
B
back_n_steps() (pypfilt.state.Snapshot method)
back_n_units() (pypfilt.state.Snapshot method)
backcast (pypfilt.summary.BackcastMonitor attribute)
BackcastMonitor (class in pypfilt.summary)
BackcastPredictiveCIs (class in pypfilt.summary)
Base (class in pypfilt.sampler)
begin_sim() (pypfilt.Monitor method)
(pypfilt.summary.BackcastMonitor method)
bisect_cdf() (in module pypfilt.obs)
brewer_qual() (in module pypfilt.plot)
build() (pypfilt.summary.Metadata method)
build_context() (in module pypfilt.build)
(pypfilt.scenario.Instance method)
C
call_event_handlers() (pypfilt.build.Context method)
can_smooth() (pypfilt.examples.predation.LotkaVolterra method)
(pypfilt.examples.simple.GaussianWalk method)
(pypfilt.examples.sir.SirCtmc method)
(pypfilt.examples.sir.SirDtmc method)
(pypfilt.examples.sir.SirOdeEuler method)
(pypfilt.examples.sir.SirOdeRk method)
(pypfilt.examples.sir.SirSde method)
(pypfilt.model.Model method)
colour_iter() (in module pypfilt.plot)
column() (pypfilt.time.Time method)
component (pypfilt.build.Context attribute)
Context (class in pypfilt.build)
cov_wt() (in module pypfilt.stats)
create_backcast() (pypfilt.state.History method)
cred_ints() (in module pypfilt.plot)
cred_wt() (in module pypfilt.stats)
crps_edf_scalar() (in module pypfilt.crps)
crps_sample() (in module pypfilt.crps)
D
d_dt() (pypfilt.examples.predation.LotkaVolterra method)
(pypfilt.examples.sir.SirOdeRk method)
data (pypfilt.build.Context attribute)
date_column() (in module pypfilt.io)
Datetime (class in pypfilt.time)
datetime_column() (in module pypfilt.io)
default() (in module pypfilt.cache)
default_priors() (in module pypfilt.examples.predation)
default_style() (in module pypfilt.plot)
descriptor (pypfilt.build.Context attribute)
(pypfilt.scenario.Instance attribute)
display_names (pypfilt.scenario.ObsModelParams attribute)
distribution() (pypfilt.examples.predation.ObsModel method)
(pypfilt.examples.simple.GaussianObs method)
(pypfilt.examples.sir.SirObs method)
(pypfilt.obs.Univariate method)
draw_samples() (pypfilt.sampler.Base method)
(pypfilt.sampler.Independent method)
(pypfilt.sampler.LatinHypercube method)
dtype() (pypfilt.time.Time method)
E
earlier_states() (in module pypfilt.state)
encode() (pypfilt.summary.Metadata method)
encode_settings() (pypfilt.summary.Metadata method)
end_sim() (pypfilt.Monitor method)
(pypfilt.summary.BackcastMonitor method)
EnsembleSnapshot (class in pypfilt.summary)
event_handler (pypfilt.build.Context attribute)
example_obs_x_data() (in module pypfilt.examples.predation)
example_obs_x_datetime_data() (in module pypfilt.examples.predation)
example_obs_y_data() (in module pypfilt.examples.predation)
example_obs_y_datetime_data() (in module pypfilt.examples.predation)
example_toml_data() (in module pypfilt.examples.predation)
example_toml_datetime_data() (in module pypfilt.examples.predation)
expand_x_lims() (pypfilt.plot.Grid method)
(pypfilt.plot.Plot method)
(pypfilt.plot.Single method)
(pypfilt.plot.Wrap method)
expand_y_lims() (pypfilt.plot.Grid method)
(pypfilt.plot.Plot method)
(pypfilt.plot.Single method)
(pypfilt.plot.Wrap method)
expect() (in module pypfilt.obs)
(pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
external_prior_samples() (pypfilt.build.Context method)
F
field_names() (pypfilt.model.Model method)
field_types() (pypfilt.examples.predation.LotkaVolterra method)
(pypfilt.Table method)
(pypfilt.examples.simple.GaussianWalk method)
(pypfilt.examples.sir.SirCtmc method)
(pypfilt.examples.sir.SirDtmc method)
(pypfilt.examples.sir.SirOdeEuler method)
(pypfilt.examples.sir.SirOdeRk method)
(pypfilt.examples.sir.SirSde method)
(pypfilt.model.Model method)
(pypfilt.summary.BackcastPredictiveCIs method)
(pypfilt.summary.EnsembleSnapshot method)
(pypfilt.summary.ForecastSnapshot method)
(pypfilt.summary.ModelCIs method)
(pypfilt.summary.ParamCovar method)
(pypfilt.summary.PredictiveCIs method)
(pypfilt.summary.SimulatedObs method)
fields_dtype() (in module pypfilt.io)
finished() (pypfilt.summary.BackcastPredictiveCIs method)
(pypfilt.Table method)
fit() (in module pypfilt)
forecast() (in module pypfilt)
(in module pypfilt.examples.predation)
ForecastSnapshot (class in pypfilt.summary)
from_dtype() (pypfilt.time.Time method)
from_file() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
from_unicode() (pypfilt.time.Time method)
G
gaussian_walk_instance() (in module pypfilt.examples.simple)
gaussian_walk_toml_data() (in module pypfilt.examples.simple)
GaussianObs (class in pypfilt.examples.simple)
GaussianWalk (class in pypfilt.examples.simple)
get_chained() (in module pypfilt.build)
get_setting() (pypfilt.build.Context method)
git_data() (pypfilt.summary.Metadata method)
global_settings (pypfilt.scenario.Specification attribute)
Grid (class in pypfilt.plot)
H
HDF5 (class in pypfilt.summary)
History (class in pypfilt.state)
history_matrix() (in module pypfilt.state)
I
Independent (class in pypfilt.sampler)
init() (pypfilt.examples.predation.LotkaVolterra method)
(pypfilt.examples.simple.GaussianWalk method)
(pypfilt.examples.sir.SirCtmc method)
(pypfilt.examples.sir.SirDtmc method)
(pypfilt.examples.sir.SirOdeEuler method)
(pypfilt.examples.sir.SirOdeRk method)
(pypfilt.examples.sir.SirSde method)
(pypfilt.model.Model method)
install_event_handler() (pypfilt.build.Context method)
Instance (class in pypfilt.scenario)
instances() (in module pypfilt.scenario)
is_history_matrix() (in module pypfilt.state)
is_instance() (pypfilt.time.Time method)
is_state_vec_matrix() (in module pypfilt.state)
is_valid() (pypfilt.model.Model method)
L
LatinHypercube (class in pypfilt.sampler)
legend() (pypfilt.plot.Plot method)
llhd_in() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
load_dataset() (in module pypfilt.io)
load_instances() (in module pypfilt)
(in module pypfilt.scenario)
load_rng_states() (in module pypfilt.cache)
load_specifications() (in module pypfilt.scenario)
load_state() (in module pypfilt.cache)
(pypfilt.Monitor method)
(pypfilt.Table method)
(pypfilt.state.History static method)
(pypfilt.summary.BackcastMonitor method)
(pypfilt.summary.ForecastSnapshot method)
(pypfilt.summary.SimulatedObs method)
load_toml() (in module pypfilt.scenario)
log_llhd() (in module pypfilt.obs)
(pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
lookup() (in module pypfilt.io)
lookup_values_count() (in module pypfilt.io)
LotkaVolterra (class in pypfilt.examples.predation)
M
Metadata (class in pypfilt.summary)
ministeps() (in module pypfilt.model)
Model (class in pypfilt.model)
ModelCIs (class in pypfilt.summary)
Monitor (class in pypfilt)
monitor() (pypfilt.Monitor method)
N
n_colours() (in module pypfilt.plot)
n_rows() (pypfilt.summary.BackcastPredictiveCIs method)
(pypfilt.Table method)
(pypfilt.summary.EnsembleSnapshot method)
(pypfilt.summary.ForecastSnapshot method)
(pypfilt.summary.ModelCIs method)
(pypfilt.summary.ParamCovar method)
(pypfilt.summary.PredictiveCIs method)
(pypfilt.summary.SimulatedObs method)
native_dtype() (pypfilt.time.Time method)
new_infections() (pypfilt.examples.sir.SirObs method)
O
Obs (class in pypfilt.obs)
obs_into_row() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
observation_model_parameter_combinations() (in module pypfilt.scenario)
observations() (in module pypfilt.plot)
ObsModel (class in pypfilt.examples.predation)
ObsModelParams (class in pypfilt.scenario)
override_dict() (in module pypfilt.scenario)
P
ParamCovar (class in pypfilt.summary)
pkg_version() (pypfilt.summary.Metadata method)
Plot (class in pypfilt.plot)
plot() (in module pypfilt.examples.predation)
plot_forecasts() (in module pypfilt.examples.predation)
plot_params() (in module pypfilt.examples.predation)
post_regularise() (in module pypfilt.resample)
predation_datetime_instance() (in module pypfilt.examples.predation)
predation_instance() (in module pypfilt.examples.predation)
predation_scalar_instance() (in module pypfilt.examples.predation)
PredictiveCIs (class in pypfilt.summary)
prepare() (pypfilt.Monitor method)
(pypfilt.summary.BackcastMonitor method)
previous_snapshot() (pypfilt.state.History method)
prior_table() (pypfilt.build.Context method)
pypfilt (module)
pypfilt.build (module)
pypfilt.cache (module)
pypfilt.crps (module)
pypfilt.examples (module)
pypfilt.examples.predation (module)
pypfilt.examples.simple (module)
pypfilt.examples.sir (module)
pypfilt.io (module)
pypfilt.model (module)
pypfilt.obs (module)
pypfilt.pfilter (module)
pypfilt.plot (module)
pypfilt.resample (module)
pypfilt.sampler (module)
pypfilt.scenario (module)
pypfilt.state (module)
pypfilt.stats (module)
pypfilt.summary (module)
pypfilt.time (module)
Q
qtl_wt() (in module pypfilt.stats)
quantiles() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
quantiles_tolerance() (pypfilt.obs.Univariate method)
R
reached_window_end() (pypfilt.state.History method)
read_fields() (in module pypfilt.io)
read_lookup_table() (in module pypfilt.io)
read_table() (in module pypfilt.io)
repack() (in module pypfilt.state)
require_history_matrix() (in module pypfilt.state)
require_state_vec_matrix() (in module pypfilt.state)
resample() (in module pypfilt.resample)
resample_weights() (in module pypfilt.resample)
resume_from_cache() (pypfilt.model.Model method)
reweight() (in module pypfilt.pfilter)
row_into_obs() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
run() (in module pypfilt.pfilter)
run_cmd() (pypfilt.summary.Metadata method)
S
save() (pypfilt.plot.Plot method)
save_dataset() (in module pypfilt.io)
save_forecasts() (pypfilt.summary.HDF5 method)
save_rng_states() (in module pypfilt.cache)
save_scalar_observations() (in module pypfilt.examples.predation)
save_state() (in module pypfilt.cache)
(pypfilt.Monitor method)
(pypfilt.Table method)
(pypfilt.state.History method)
(pypfilt.summary.BackcastMonitor method)
(pypfilt.summary.ForecastSnapshot method)
(pypfilt.summary.SimulatedObs method)
Scalar (class in pypfilt.time)
scale_x_date() (pypfilt.plot.Plot method)
scale_y_date() (pypfilt.plot.Plot method)
Scenario (class in pypfilt.scenario)
scenario_id (pypfilt.build.Context attribute)
(pypfilt.scenario.Instance attribute)
(pypfilt.scenario.Scenario attribute)
scenario_observation_model_combinations() (in module pypfilt.scenario)
scenario_observation_model_parameters() (in module pypfilt.scenario)
scenario_settings (pypfilt.scenario.Specification attribute)
scenarios() (in module pypfilt.scenario)
select_next_event() (pypfilt.examples.sir.SirCtmc method)
series() (in module pypfilt.plot)
set_chained() (in module pypfilt.build)
set_chained_default() (in module pypfilt.build)
set_period() (pypfilt.time.Datetime method)
(pypfilt.time.Scalar method)
set_resampled() (pypfilt.state.History method)
set_time_step() (pypfilt.state.History method)
set_xlabel() (pypfilt.plot.Plot method)
set_ylabel() (pypfilt.plot.Plot method)
settings (pypfilt.build.Context attribute)
(pypfilt.scenario.Instance attribute)
(pypfilt.scenario.Scenario attribute)
shift_window_back() (pypfilt.state.History method)
simulate() (in module pypfilt.obs)
(pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
simulate_from_model() (in module pypfilt)
simulated_field_types() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
simulated_obs() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
simulated_obs_crps() (in module pypfilt.crps)
SimulatedObs (class in pypfilt.summary)
Single (class in pypfilt.plot)
sir_toml_data() (in module pypfilt.examples.sir)
SirCtmc (class in pypfilt.examples.sir)
SirDtmc (class in pypfilt.examples.sir)
SirObs (class in pypfilt.examples.sir)
SirOdeEuler (class in pypfilt.examples.sir)
SirOdeRk (class in pypfilt.examples.sir)
SirSde (class in pypfilt.examples.sir)
Snapshot (class in pypfilt.state)
snapshot() (pypfilt.state.History method)
source (pypfilt.build.Context attribute)
(pypfilt.scenario.Instance attribute)
(pypfilt.scenario.Scenario attribute)
(pypfilt.scenario.Specification attribute)
Specification (class in pypfilt.scenario)
stat_info() (pypfilt.model.Model method)
step() (in module pypfilt.pfilter)
step_count() (pypfilt.time.Time method)
step_of() (pypfilt.time.Time method)
steps() (pypfilt.time.Time method)
string_field() (in module pypfilt.io)
subplots() (pypfilt.plot.Grid method)
(pypfilt.plot.Plot method)
(pypfilt.plot.Single method)
(pypfilt.plot.Wrap method)
summary_window() (pypfilt.state.History method)
T
Table (class in pypfilt)
Time (class in pypfilt.time)
time_field() (in module pypfilt.io)
time_of_obs() (pypfilt.time.Time method)
to_dtype() (pypfilt.time.Time method)
to_unicode() (pypfilt.time.Time method)
U
unit (pypfilt.scenario.ObsModelParams attribute)
Univariate (class in pypfilt.obs)
update() (pypfilt.examples.predation.LotkaVolterra method)
(pypfilt.examples.simple.GaussianWalk method)
(pypfilt.examples.sir.SirCtmc method)
(pypfilt.examples.sir.SirDtmc method)
(pypfilt.examples.sir.SirOdeEuler method)
(pypfilt.examples.sir.SirOdeRk method)
(pypfilt.examples.sir.SirSde method)
(pypfilt.model.Model method)
V
value_format (pypfilt.scenario.ObsModelParams attribute)
values (pypfilt.scenario.ObsModelParams attribute)
W
window (pypfilt.summary.BackcastMonitor attribute)
with_observation_tables() (pypfilt.time.Datetime method)
(pypfilt.time.Scalar method)
with_observation_tables_from_time() (pypfilt.time.Datetime method)
(pypfilt.time.Scalar method)
Wrap (class in pypfilt.plot)
write_example_files() (in module pypfilt.examples.predation)
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