pypfilt
0.8.1
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Contributing to pypfilt
Testing with nox
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Editable installs
Change Log
pypfilt
Index
Edit on Bitbucket
Index
_
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A
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B
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C
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D
|
E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
|
U
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V
|
W
_
__init__() (pypfilt.time.Datetime method)
(pypfilt.time.Scalar method)
A
active_particles() (pypfilt.examples.sir.SirCtmc method)
adaptive_fit() (in module pypfilt)
adaptive_fit_exponents() (pypfilt.pfilter.Results method)
add_rows() (pypfilt.summary.BackcastPredictiveCIs method)
(pypfilt.summary.EnsembleSnapshot method)
(pypfilt.summary.ForecastSnapshot method)
(pypfilt.summary.ModelCIs method)
(pypfilt.summary.ParamCovar method)
(pypfilt.summary.PartitionModelCIs method)
(pypfilt.summary.PartitionPredictiveCIs method)
(pypfilt.summary.PredictiveCIs method)
(pypfilt.summary.SimulatedObs method)
(pypfilt.summary.Table method)
add_scalar() (pypfilt.time.Time method)
add_to_legend() (pypfilt.plot.Plot method)
AfterRegularisation (class in pypfilt.event)
AfterResample (class in pypfilt.event)
AfterReweight (class in pypfilt.event)
AfterTimeStep (class in pypfilt.event)
all_observations (pypfilt.build.Context attribute)
apply_ground_truth_prior() (in module pypfilt.examples.predation)
apply_style() (in module pypfilt.plot)
as_list() (in module pypfilt.scenario)
avg_var_wt() (in module pypfilt.stats)
B
back_n_steps() (pypfilt.state.Snapshot method)
back_n_steps_state_vec() (pypfilt.state.Snapshot method)
back_n_units() (pypfilt.state.Snapshot method)
back_n_units_state_vec() (pypfilt.state.Snapshot method)
backcast (pypfilt.summary.BackcastMonitor attribute)
BackcastMonitor (class in pypfilt.summary)
BackcastPredictiveCIs (class in pypfilt.summary)
Base (class in pypfilt.sampler)
BeforeRegularisation (class in pypfilt.event)
BeforeResample (class in pypfilt.event)
begin_sim() (pypfilt.summary.BackcastMonitor method)
(pypfilt.summary.Monitor method)
bisect_cdf() (in module pypfilt.obs)
brewer_qual() (in module pypfilt.plot)
build() (pypfilt.summary.Metadata method)
build_context() (in module pypfilt.build)
(pypfilt.scenario.Instance method)
C
call_event_handlers() (pypfilt.build.Context method)
can_smooth() (pypfilt.examples.lorenz.Lorenz63 method)
(pypfilt.examples.predation.LotkaVolterra method)
(pypfilt.examples.sir.SirCtmc method)
(pypfilt.examples.sir.SirDtmc method)
(pypfilt.examples.sir.SirOdeEuler method)
(pypfilt.examples.sir.SirOdeRk method)
(pypfilt.examples.sir.SirSde method)
(pypfilt.model.Model method)
colour_iter() (in module pypfilt.plot)
column() (pypfilt.time.Time method)
component (pypfilt.build.Context attribute)
Context (class in pypfilt.build)
cov_wt() (in module pypfilt.stats)
create_backcast() (pypfilt.state.History method)
cred_ints() (in module pypfilt.plot)
cred_wt() (in module pypfilt.stats)
crps_edf_scalar() (in module pypfilt.crps)
crps_sample() (in module pypfilt.crps)
ctx (pypfilt.event.AfterRegularisation attribute)
(pypfilt.event.AfterResample attribute)
(pypfilt.event.AfterReweight attribute)
(pypfilt.event.AfterTimeStep attribute)
(pypfilt.event.BeforeRegularisation attribute)
(pypfilt.event.BeforeResample attribute)
custom_format_strings() (pypfilt.time.Datetime method)
D
d_dt() (pypfilt.examples.lorenz.Lorenz63 method)
(pypfilt.examples.predation.LotkaVolterra method)
(pypfilt.examples.sir.SirOdeRk method)
(pypfilt.model.OdeModel method)
data (pypfilt.build.Context attribute)
date_column() (in module pypfilt.io)
Datetime (class in pypfilt.time)
datetime_column() (in module pypfilt.io)
default() (in module pypfilt.cache)
default_priors() (in module pypfilt.examples.predation)
default_style() (in module pypfilt.plot)
DELETE_KEY (class in pypfilt.scenario)
descriptor (pypfilt.build.Context attribute)
(pypfilt.scenario.Instance attribute)
display_names (pypfilt.scenario.ObsModelParams attribute)
distribution() (pypfilt.examples.lorenz.ObsLorenz63 method)
(pypfilt.examples.predation.ObsModel method)
(pypfilt.examples.simple.GaussianObs method)
(pypfilt.examples.sir.SirObs method)
(pypfilt.obs.Univariate method)
draw_samples() (pypfilt.sampler.Base method)
(pypfilt.sampler.LatinHypercube method)
dt (pypfilt.time.TimeStep attribute)
dtype() (pypfilt.time.Time method)
E
earlier_states() (in module pypfilt.state)
encode() (pypfilt.summary.Metadata method)
encode_settings() (pypfilt.summary.Metadata method)
end (pypfilt.time.TimeStep attribute)
end() (pypfilt.io.Lookup method)
end_sim() (pypfilt.summary.BackcastMonitor method)
(pypfilt.summary.Monitor method)
end_time() (pypfilt.build.Context method)
EnsembleSnapshot (class in pypfilt.summary)
event_handler (pypfilt.build.Context attribute)
example_obs_x_data() (in module pypfilt.examples.predation)
example_obs_x_datetime_data() (in module pypfilt.examples.predation)
example_obs_y_data() (in module pypfilt.examples.predation)
example_obs_y_datetime_data() (in module pypfilt.examples.predation)
example_toml_data() (in module pypfilt.examples.predation)
example_toml_datetime_data() (in module pypfilt.examples.predation)
expand_x_lims() (pypfilt.plot.Grid method)
(pypfilt.plot.Plot method)
(pypfilt.plot.Single method)
(pypfilt.plot.Wrap method)
expand_y_lims() (pypfilt.plot.Grid method)
(pypfilt.plot.Plot method)
(pypfilt.plot.Single method)
(pypfilt.plot.Wrap method)
expect() (in module pypfilt.obs)
(pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
external_prior_samples() (pypfilt.build.Context method)
F
field_names() (pypfilt.model.Model method)
field_types() (pypfilt.examples.lorenz.Lorenz63 method)
(pypfilt.examples.predation.LotkaVolterra method)
(pypfilt.examples.simple.GaussianWalk method)
(pypfilt.examples.sir.SirCtmc method)
(pypfilt.examples.sir.SirDtmc method)
(pypfilt.examples.sir.SirOdeEuler method)
(pypfilt.examples.sir.SirOdeRk method)
(pypfilt.examples.sir.SirSde method)
(pypfilt.model.Model method)
(pypfilt.summary.BackcastPredictiveCIs method)
(pypfilt.summary.EnsembleSnapshot method)
(pypfilt.summary.ForecastSnapshot method)
(pypfilt.summary.ModelCIs method)
(pypfilt.summary.ParamCovar method)
(pypfilt.summary.PartitionModelCIs method)
(pypfilt.summary.PartitionPredictiveCIs method)
(pypfilt.summary.PredictiveCIs method)
(pypfilt.summary.SimulatedObs method)
(pypfilt.summary.Table method)
fields_dtype() (in module pypfilt.io)
finished() (pypfilt.summary.BackcastPredictiveCIs method)
(pypfilt.summary.Table method)
fit() (in module pypfilt)
fit_effective_fraction() (in module pypfilt.adaptive)
fixed_exponents() (in module pypfilt.adaptive)
forecast() (in module pypfilt)
(in module pypfilt.examples.predation)
forecast_times() (pypfilt.pfilter.Results method)
ForecastSnapshot (class in pypfilt.summary)
from_dtype() (pypfilt.time.Time method)
from_file() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
from_unicode() (pypfilt.time.Time method)
G
gaussian_walk_instance() (in module pypfilt.examples.simple)
gaussian_walk_toml_data() (in module pypfilt.examples.simple)
GaussianObs (class in pypfilt.examples.simple)
GaussianWalk (class in pypfilt.examples.simple)
get_chained() (in module pypfilt.build)
get_setting() (pypfilt.build.Context method)
git_data() (pypfilt.summary.Metadata method)
global_settings (pypfilt.scenario.Specification attribute)
Grid (class in pypfilt.plot)
H
HDF5 (class in pypfilt.summary)
History (class in pypfilt.state)
history_matrix() (in module pypfilt.state)
I
init() (pypfilt.examples.sir.SirCtmc method)
(pypfilt.examples.sir.SirDtmc method)
(pypfilt.examples.sir.SirOdeEuler method)
(pypfilt.examples.sir.SirOdeRk method)
(pypfilt.examples.sir.SirSde method)
(pypfilt.model.Model method)
install_event_handler() (pypfilt.build.Context method)
Instance (class in pypfilt.scenario)
instances() (in module pypfilt.scenario)
is_history_matrix() (in module pypfilt.state)
is_instance() (pypfilt.time.Time method)
is_state_vec_matrix() (in module pypfilt.state)
is_valid() (pypfilt.model.Model method)
L
LatinHypercube (class in pypfilt.sampler)
legend() (pypfilt.plot.Plot method)
llhd_in() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
load_dataset() (in module pypfilt.io)
load_instances() (in module pypfilt)
(in module pypfilt.scenario)
load_rng_states() (in module pypfilt.cache)
load_specifications() (in module pypfilt.scenario)
load_state() (in module pypfilt.cache)
(pypfilt.state.History static method)
(pypfilt.summary.BackcastMonitor method)
(pypfilt.summary.ForecastSnapshot method)
(pypfilt.summary.Monitor method)
(pypfilt.summary.SimulatedObs method)
(pypfilt.summary.Table method)
load_summary_table() (in module pypfilt.io)
load_toml() (in module pypfilt.scenario)
log_llhd() (in module pypfilt.obs)
(pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
log_llhds (pypfilt.event.LogLikelihood attribute)
LogLikelihood (class in pypfilt.event)
Lookup (class in pypfilt.io)
lookup() (in module pypfilt.io)
(pypfilt.io.Lookup method)
lookup_times() (in module pypfilt.io)
lookup_values_count() (in module pypfilt.io)
Lorenz63 (class in pypfilt.examples.lorenz)
lorenz63_all_scenarios_toml() (in module pypfilt.examples.lorenz)
lorenz63_forecast_regularised_toml() (in module pypfilt.examples.lorenz)
lorenz63_forecast_toml() (in module pypfilt.examples.lorenz)
lorenz63_simulate_toml() (in module pypfilt.examples.lorenz)
LotkaVolterra (class in pypfilt.examples.predation)
M
Metadata (class in pypfilt.summary)
ministeps() (in module pypfilt.model)
Model (class in pypfilt.model)
ModelCIs (class in pypfilt.summary)
module
pypfilt
pypfilt.adaptive
pypfilt.build
pypfilt.cache
pypfilt.crps
pypfilt.event
pypfilt.examples
pypfilt.examples.lorenz
pypfilt.examples.predation
pypfilt.examples.simple
pypfilt.examples.sir
pypfilt.io
pypfilt.model
pypfilt.obs
pypfilt.pfilter
pypfilt.plot
pypfilt.resample
pypfilt.sampler
pypfilt.scenario
pypfilt.state
pypfilt.stats
pypfilt.summary
pypfilt.time
Monitor (class in pypfilt.summary)
monitor() (pypfilt.summary.Monitor method)
N
n_colours() (in module pypfilt.plot)
n_rows() (pypfilt.summary.BackcastPredictiveCIs method)
(pypfilt.summary.EnsembleSnapshot method)
(pypfilt.summary.ForecastSnapshot method)
(pypfilt.summary.ModelCIs method)
(pypfilt.summary.ParamCovar method)
(pypfilt.summary.PartitionModelCIs method)
(pypfilt.summary.PartitionPredictiveCIs method)
(pypfilt.summary.PredictiveCIs method)
(pypfilt.summary.SimulatedObs method)
(pypfilt.summary.Table method)
native_dtype() (pypfilt.time.Time method)
new_infections() (pypfilt.examples.sir.SirObs method)
O
Obs (class in pypfilt.obs)
obs (pypfilt.event.LogLikelihood attribute)
obs_into_row() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
obs_list (pypfilt.event.AfterTimeStep attribute)
observation_model_parameter_combinations() (in module pypfilt.scenario)
observations (pypfilt.time.TimeStepWithObservations attribute)
observations() (in module pypfilt.plot)
ObsLorenz63 (class in pypfilt.examples.lorenz)
ObsModel (class in pypfilt.examples.predation)
ObsModelParams (class in pypfilt.scenario)
OdeModel (class in pypfilt.model)
override_dict() (in module pypfilt.scenario)
override_settings() (pypfilt.build.Context method)
P
ParamCovar (class in pypfilt.summary)
particle_count() (pypfilt.build.Context method)
partition (pypfilt.event.AfterRegularisation attribute)
(pypfilt.event.AfterResample attribute)
(pypfilt.event.BeforeRegularisation attribute)
(pypfilt.event.BeforeResample attribute)
PartitionModelCIs (class in pypfilt.summary)
PartitionPredictiveCIs (class in pypfilt.summary)
pkg_version() (pypfilt.summary.Metadata method)
Plot (class in pypfilt.plot)
plot() (in module pypfilt.examples.predation)
plot_forecasts() (in module pypfilt.examples.predation)
plot_params() (in module pypfilt.examples.predation)
post_regularise() (in module pypfilt.resample)
predation_datetime_instance() (in module pypfilt.examples.predation)
predation_instance() (in module pypfilt.examples.predation)
predation_scalar_instance() (in module pypfilt.examples.predation)
PredictiveCIs (class in pypfilt.summary)
prepare() (pypfilt.summary.BackcastMonitor method)
(pypfilt.summary.Monitor method)
previous_snapshot() (pypfilt.state.History method)
prior_table() (pypfilt.build.Context method)
pypfilt
module
pypfilt.adaptive
module
pypfilt.build
module
pypfilt.cache
module
pypfilt.crps
module
pypfilt.event
module
pypfilt.examples
module
pypfilt.examples.lorenz
module
pypfilt.examples.predation
module
pypfilt.examples.simple
module
pypfilt.examples.sir
module
pypfilt.io
module
pypfilt.model
module
pypfilt.obs
module
pypfilt.pfilter
module
pypfilt.plot
module
pypfilt.resample
module
pypfilt.sampler
module
pypfilt.scenario
module
pypfilt.state
module
pypfilt.stats
module
pypfilt.summary
module
pypfilt.time
module
Q
qtl_wt() (in module pypfilt.stats)
quantiles() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
quantiles_tolerance() (pypfilt.obs.Univariate method)
R
reached_window_end() (pypfilt.state.History method)
read_fields() (in module pypfilt.io)
read_lookup_table() (in module pypfilt.io)
read_table() (in module pypfilt.io)
repack() (in module pypfilt.state)
require_history_matrix() (in module pypfilt.state)
require_state_vec_matrix() (in module pypfilt.state)
resample() (in module pypfilt.resample)
resample_ensemble() (in module pypfilt.pfilter)
resample_ixs() (in module pypfilt.resample)
resample_mask (pypfilt.event.AfterTimeStep attribute)
resample_weights() (in module pypfilt.resample)
Result (class in pypfilt.pfilter)
Results (class in pypfilt.pfilter)
resume_from_cache() (pypfilt.model.Model method)
reweight_ensemble() (in module pypfilt.pfilter)
reweight_partition() (in module pypfilt.pfilter)
row_into_obs() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
run() (in module pypfilt.pfilter)
run_cmd() (pypfilt.summary.Metadata method)
S
save() (pypfilt.plot.Plot method)
save_dataset() (in module pypfilt.io)
save_forecasts() (pypfilt.summary.HDF5 method)
save_rng_states() (in module pypfilt.cache)
save_scalar_observations() (in module pypfilt.examples.predation)
save_state() (in module pypfilt.cache)
(pypfilt.state.History method)
(pypfilt.summary.BackcastMonitor method)
(pypfilt.summary.ForecastSnapshot method)
(pypfilt.summary.Monitor method)
(pypfilt.summary.SimulatedObs method)
(pypfilt.summary.Table method)
Scalar (class in pypfilt.time)
scale_x_date() (pypfilt.plot.Plot method)
scale_y_date() (pypfilt.plot.Plot method)
Scenario (class in pypfilt.scenario)
scenario_id (pypfilt.build.Context attribute)
(pypfilt.scenario.Instance attribute)
(pypfilt.scenario.Scenario attribute)
scenario_observation_model_combinations() (in module pypfilt.scenario)
scenario_observation_model_parameters() (in module pypfilt.scenario)
scenario_settings (pypfilt.scenario.Specification attribute)
scenarios() (in module pypfilt.scenario)
select_next_event() (pypfilt.examples.sir.SirCtmc method)
series() (in module pypfilt.plot)
set_chained() (in module pypfilt.build)
set_chained_default() (in module pypfilt.build)
set_period() (pypfilt.time.Datetime method)
(pypfilt.time.Scalar method)
set_resampled() (pypfilt.state.History method)
set_time_step() (pypfilt.state.History method)
set_xlabel() (pypfilt.plot.Plot method)
set_ylabel() (pypfilt.plot.Plot method)
settings (pypfilt.build.Context attribute)
(pypfilt.scenario.Instance attribute)
(pypfilt.scenario.Scenario attribute)
shift_window_back() (pypfilt.state.History method)
simulate() (in module pypfilt.obs)
(pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
simulate_from_model() (in module pypfilt)
simulated_field_types() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
simulated_obs() (pypfilt.obs.Obs method)
(pypfilt.obs.Univariate method)
simulated_obs_crps() (in module pypfilt.crps)
SimulatedObs (class in pypfilt.summary)
Single (class in pypfilt.plot)
sir_toml_data() (in module pypfilt.examples.sir)
SirCtmc (class in pypfilt.examples.sir)
SirDtmc (class in pypfilt.examples.sir)
SirObs (class in pypfilt.examples.sir)
SirOdeEuler (class in pypfilt.examples.sir)
SirOdeRk (class in pypfilt.examples.sir)
SirSde (class in pypfilt.examples.sir)
sliced() (pypfilt.state.Snapshot method)
Snapshot (class in pypfilt.state)
snapshot (pypfilt.event.AfterReweight attribute)
(pypfilt.event.AfterTimeStep attribute)
snapshot() (pypfilt.state.History method)
source (pypfilt.build.Context attribute)
(pypfilt.scenario.Instance attribute)
(pypfilt.scenario.Scenario attribute)
(pypfilt.scenario.Specification attribute)
Specification (class in pypfilt.scenario)
start (pypfilt.time.TimeStep attribute)
start() (pypfilt.io.Lookup method)
start_time() (pypfilt.build.Context method)
stat_info() (pypfilt.model.Model method)
step() (in module pypfilt.pfilter)
step_count() (pypfilt.time.Time method)
step_number (pypfilt.time.TimeStepWithObservations attribute)
step_of() (pypfilt.time.Time method)
steps() (pypfilt.time.Time method)
string_field() (in module pypfilt.io)
subplots() (pypfilt.plot.Grid method)
(pypfilt.plot.Plot method)
(pypfilt.plot.Single method)
(pypfilt.plot.Wrap method)
summary_count() (pypfilt.build.Context method)
summary_times() (pypfilt.build.Context method)
summary_window() (pypfilt.state.History method)
T
Table (class in pypfilt.summary)
Time (class in pypfilt.time)
time (pypfilt.event.AfterResample attribute)
(pypfilt.event.BeforeResample attribute)
time_field() (in module pypfilt.io)
time_of_obs() (pypfilt.time.Time method)
time_scale() (pypfilt.scenario.Instance method)
time_step (pypfilt.time.TimeStepWithObservations attribute)
time_step_of_next_observation() (pypfilt.time.Datetime method)
(pypfilt.time.Scalar method)
time_steps() (pypfilt.build.Context method)
time_units() (pypfilt.build.Context method)
times() (pypfilt.io.Lookup method)
TimeStep (class in pypfilt.time)
TimeStepWithObservations (class in pypfilt.time)
to_dtype() (pypfilt.time.Time method)
to_unicode() (pypfilt.time.Time method)
U
unit (pypfilt.scenario.ObsModelParams attribute)
Univariate (class in pypfilt.obs)
update() (pypfilt.examples.simple.GaussianWalk method)
(pypfilt.examples.sir.SirCtmc method)
(pypfilt.examples.sir.SirDtmc method)
(pypfilt.examples.sir.SirOdeEuler method)
(pypfilt.examples.sir.SirSde method)
(pypfilt.model.Model method)
(pypfilt.model.OdeModel method)
V
value_count() (pypfilt.io.Lookup method)
value_format (pypfilt.scenario.ObsModelParams attribute)
values (pypfilt.scenario.ObsModelParams attribute)
vec (pypfilt.event.AfterRegularisation attribute)
(pypfilt.event.AfterResample attribute)
(pypfilt.event.BeforeRegularisation attribute)
(pypfilt.event.BeforeResample attribute)
W
weights (pypfilt.event.LogLikelihood attribute)
window (pypfilt.summary.BackcastMonitor attribute)
with_observation_tables() (pypfilt.time.Datetime method)
(pypfilt.time.Scalar method)
Wrap (class in pypfilt.plot)
write_example_files() (in module pypfilt.examples.predation)
write_table() (in module pypfilt.io)
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